scripting - Aid with tcsh shell script for protein research -

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could please me figure out what's wrong it? thanks!

it gives me lots of these errors when try initialize it:

startdssp not created due error: empty protein, or no valid complete residues

my script:

#! /usr/bin/env tcsh  set getlocation = "/home/yyyyyy/desktop/dcompartment/xxxxxxxx/perl_scripts" set getname = "get_right_pdb_format.pl" set sslocation = "/home/yyyyyyy/desktop/dcompartment/xxxxxxxx/perl_scripts" set ssname = "get_ss_dssp_itasser.pl" set suffix = ".dssp"  foreach file (*.pdb)     cp $getlocation/$getname .     cp $sslocation/$ssname .     sed -i "s/2jix\.pdb/$file/g" $getname     perl $getname     dssp -i $file-1 -o $file:r     sed -i "s/bamboozled/$file:r/g" $ssname     sed -i "s/2j1x\.pdb_1/$file:r/g" $ssname     perl $ssname end


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